Browse database for individual tissue/cell
Data for individual tissue/cell can be browsed by clicking the Browse Database tab.
Below is an example of searched data in a table with only 10 records on the first page. The other list can be viewed either by changing the number of records and by clicking on the page numbers at the bottom right corner of the table.
At the end of the data table we have buttons to export data to Galaxy, GREAT and download in FASTA and BED.
On the homepage the database can browsed using different searching options by selecting the right genome, type and entering the query.
- Cell/Tissue: It takes tissue/cell name.
- Method: Method used to identify super-enhancers. For example Med1
- Gene: It takes gene symbol as input
The overlap analysis tool can be used to check the overlap of predicted enhancers/super-enhancers with the super-enhancers present in dbSUPER database.
This can be performed by clicking the "Overlap Analysis" tab and by uploading your regions of interests in BED format.
The BED file should be in tab delimited formate without header, an example can be found here
Below is a screenshot of upload BED page.
After clicking the "Start Analysis" button, it will take a while to show the analysis based on the number of regions you provided. Bellow is an example of overlap analysis.
The results shown in the above donut graph are also in available in the tabular form below, which can be downloaded as html.