Data Sources

ChIP-seq data sources

Cell/Tissue	Genome	Factor	Purpose	GEO mark	GEO input
Adipose Nuclei	hg19	H3K27ac	Enhancer/Rank	GSM916066 \| wig	GSM621401 \| wig
Adipose Tissue	hg19	H3K27ac	Enhancer/Rank	GSM906394 \| wig	GSM906416 \| wig
Adrenal Gland	hg19	H3K27ac	Enhancer/Rank	GSM1013126 \| wig	GSM1013168 \| wig
Aorta	hg19	H3K27ac	Enhancer/Rank	GSM906392 \| wig	GSM1013169 \| wig
Astrocytes	hg19	H3K27ac	Enhancer/Rank	GSM733763 \| bigWig	GSM733678 \| bigWig
Bladder	hg19	H3K27ac	Enhancer/Rank	GSM1013133 \| wig	GSM1059457 \| wig
Brain Angular Gyrus	hg19	H3K27ac	Enhancer/Rank	GSM773016 \| wig	GSM772931 \| wig
Brain Anterior Caudate	hg19	H3K27ac	Enhancer/Rank	GSM772832 \| wig	GSM772826 \| wig
Brain Cingulate Gyrus	hg19	H3K27ac	Enhancer/Rank	GSM773011 \| wig	GSM772990 \| wig
Brain Hippocampus Middle	hg19	H3K27ac	Enhancer/Rank	GSM773020 \| wig	GSM773019 \| wig
Brain Hippocampus Middle 150	hg19	H3K27ac	Enhancer/Rank	GSM916035 \| wig	GSM916037 \| wig
Brain Inferior Temporal Lobe	hg19	H3K27ac	Enhancer/Rank	GSM772995 \| wig	GSM772991 \| wig
Brain Mid Frontal Lobe	hg19	H3K27ac	Enhancer/Rank	GSM773015 \| wig	GSM773010 \| wig
CD14	hg19	H3K27ac	Enhancer/Rank	GSM1003559 \| bigWig	GSM1003475 \| bigWig
CD19 Primary	hg19	H3K27ac	Enhancer/Rank	GSM1027287 \| wig	GSM1027304 \| wig
CD20	hg19	H3K27ac	Enhancer/Rank	GSM1003459 \| bigWig	GSM1003477 \| bigWig
CD3	hg19	H3K27ac	Enhancer/Rank	GSM1058764 \| wig	GSM1058789 \| wig
CD34 adult	hg19	H3K27ac	Enhancer/Rank	GSM908051 \| wig	GSM908073 \| wig
CD34 fetal	hg19	H3K27ac	Enhancer/Rank	GSM908050 \| wig	GSM908072 \| wig
CD34 Primary RO01480	hg19	H3K27ac	Enhancer/Rank	GSM772885 \| wig	GSM706847 \| wig
CD34 Primary RO01536	hg19	H3K27ac	Enhancer/Rank	GSM772870 \| wig	GSM772950 \| wig
CD34 Primary RO01549	hg19	H3K27ac	Enhancer/Rank	GSM772894 \| wig	GSM706846 \| wig
CD4 Memory Primary 7pool	hg19	H3K27ac	Enhancer/Rank	GSM772963 \| wig	GSM772881 \| wig
CD4 Memory Primary 8pool	hg19	H3K27ac	Enhancer/Rank	GSM772997 \| wig	GSM772930 \| wig
CD4 Naive Primary 7pool	hg19	H3K27ac	Enhancer/Rank	GSM772934 \| wig	GSM772876 \| wig
CD4 Naive Primary 8pool	hg19	H3K27ac	Enhancer/Rank	GSM772835 \| wig	GSM772916 \| wig
CD4p CD225int CD127p Tmem	hg19	H3K27ac	Enhancer/Rank	GSM916026 \| wig	GSM772953 \| wig
CD4p CD25- CD45RAp Naive	hg19	H3K27ac	Enhancer/Rank	GSM773004 \| wig	GSM772920 \| wig
CD4p CD25- CD45ROp Memory	hg19	H3K27ac	Enhancer/Rank	GSM772859 \| wig	GSM772999 \| wig
CD4p CD25- Il17- PMAstim Th	hg19	H3K27ac	Enhancer/Rank	GSM772905 \| wig	GSM772904 \| wig
CD4p CD25- Il17p PMAstim Th17	hg19	H3K27ac	Enhancer/Rank	GSM772987 \| wig	GSM772988 \| wig
CD56	hg19	H3K27ac	Enhancer/Rank	GSM1027288 \| wig	GSM1027305 \| wig
CD8 Memory 7pool	hg19	H3K27ac	Enhancer/Rank	GSM772880 \| wig	GSM772874 \| wig
CD8 Naive 7pool	hg19	H3K27ac	Enhancer/Rank	GSM772949 \| wig	GSM772854 \| wig
CD8 Naive 8pool	hg19	H3K27ac	Enhancer/Rank	GSM772976 \| wig	GSM773034 \| wig
CD8 primiary	hg19	H3K27ac	Enhancer/Rank	GSM1102781 \| wig	GSM1102806 \| wig
Colon Crypt 1	hg19	H3K27ac	Enhancer/Rank	GSM883685	GSM883676
Colon Crypt 2	hg19	H3K27ac	Enhancer/Rank	GSM883686	GSM883677
Colon Crypt 3	hg19	H3K27ac	Enhancer/Rank	GSM883687	GSM883678
DND41	hg19	H3K27ac	Enhancer/Rank	GSM1003462 \| bigWig	GSM1003558 \| bigWig
Duodenum Smooth Muscle	hg19	H3K27ac	Enhancer/Rank	GSM772908 \| wig	GSM772910 \| wig
Esophagus	hg19	H3K27ac	Enhancer/Rank	GSM1013127 \| wig	GSM906415 \| wig
Fetal Intestine	hg19	H3K27ac	Enhancer/Rank	GSM1058766 \| wig	GSM1058787 \| wig
Fetal Intestine Large	hg19	H3K27ac	Enhancer/Rank	GSM1058765 \| wig	GSM1058786 \| wig
Fetal Muscle	hg19	H3K27ac	Enhancer/Rank	GSM1058767 \| wig	GSM1058788 \| wig
Fetal Thymus	hg19	H3K27ac	Enhancer/Rank	GSM1027289 \| wig	GSM1036258 \| wig
Gastric	hg19	H3K27ac	Enhancer/Rank	GSM1013122 \| wig	GSM956032 \| wig
GM12878	hg19	H3K27ac	Enhancer/Rank	GSM733771 \| bigWig	GSM733742 \| bigWig
H1	hg19	H3K27ac	Enhancer/Rank	GSM466732 \| wig	GSM605333 \| wig
H2171	hg19	H3K27ac	Enhancer/Rank	GSM894067 \| wig	GSM894092 \| wig
HCC1954	hg19	H3K27ac	Enhancer/Rank	GSM721136	GSM721139
HCT-116	hg19	H3K27ac	Enhancer/Rank	GSM945853 \| bigWig	GSM749774 \| bigWig
HeLa	hg19	H3K27ac	Enhancer/Rank	GSM733684 \| bigWig	GSM733659 \| bigWig
HepG2	hg19	H3K27ac	Enhancer/Rank	GSM733743 \| bigWig	GSM733732 \| bigWig
HMEC	hg19	H3K27ac	Enhancer/Rank	GSM733660 \| bigWig	GSM733668 \| bigWig
HSMMtube	hg19	H3K27ac	Enhancer/Rank	GSM733666 \| bigWig	GSM733648 \| bigWig
HUVEC	hg19	H3K27ac	Enhancer/Rank	GSM733691 \| bigWig	GSM733715 \| bigWig
IMR90	hg19	H3K27ac	Enhancer/Rank	GSM469966 \| wig	GSM521926 \| wig
Jurkat	hg19	H3K27ac	Enhancer/Rank	GSM1224780	GSM569086 \| wig
K562	hg19	H3K27ac	Enhancer/Rank	GSM733656 \| bigWig	GSM733780 \| bigWig
Left Ventricle	hg19	H3K27ac	Enhancer/Rank	GSM908951 \| wig	GSM908968 \| wig
LNCaP	hg19	H3K27ac	Enhancer/Rank	GSM686937	GSM686947
Lung	hg19	H3K27ac	Enhancer/Rank	GSM1013123 \| wig	GSM956031 \| wig
MCF-7	hg19	H3K27ac	Enhancer/Rank	GSM946850	GSM945859 \| bigWig
MM1S	hg19	H3K27ac	Enhancer/Rank	GSM894083 \| wig	GSM894087 \| wig
NHDF-Ad	hg19	H3K27ac	Enhancer/Rank	GSM733662 \| bigWig	GSM733750 \| bigWig
NHLF	hg19	H3K27ac	Enhancer/Rank	GSM733646 \| bigWig	GSM945280 \| bigWig
Osteoblasts	hg19	H3K27ac	Enhancer/Rank	GSM733739 \| bigWig	GSM733697 \| bigWig
Ovary	hg19	H3K27ac	Enhancer/Rank	GSM956009 \| wig	GSM1013171 \| wig
Panc1	hg19	H3K27ac	Enhancer/Rank	GSM818826 \| bigWig	GSM818828 \| bigWig
Pancreas	hg19	H3K27ac	Enhancer/Rank	GSM1013129 \| wig	GSM1013172 \| wig
Psoas Muscle	hg19	H3K27ac	Enhancer/Rank	GSM1013130 \| wig	GSM1013173 \| wig
Right Atrium	hg19	H3K27ac	Enhancer/Rank	GSM910557 \| wig	GSM906421 \| wig
Right Ventricle	hg19	H3K27ac	Enhancer/Rank	GSM1013124 \| wig	GSM1013167 \| wig
RPMI-8402	hg19	H3K27ac	Enhancer/Rank	GSM1246865 \| wig	Deprecated: explode(): Passing null to parameter #2 ($string) of type string is deprecated in /home/isablsud/asntech.org/dbsuper/data_geo.php on line 121
Sigmoid Colon	hg19	H3K27ac	Enhancer/Rank	GSM915331 \| wig	GSM906422 \| wig
Skeletal Muscle	hg19	H3K27ac	Enhancer/Rank	GSM916064 \| wig	GSM621641 \| wig
Skeletal Muscle Myoblast	hg19	H3K27ac	Enhancer/Rank	GSM733755 \| bigWig	GSM733663 \| bigWig
Small Intestine	hg19	H3K27ac	Enhancer/Rank	GSM1013131 \| wig	GSM1120365 \| wig
Spleen	hg19	H3K27ac	Enhancer/Rank	GSM1013132 \| wig	GSM1013174 \| wig
Stomach Smooth Muscle	hg19	H3K27ac	Enhancer/Rank	GSM916065 \| wig	GSM772883 \| wig
Thymus	hg19	H3K27ac	Enhancer/Rank	GSM1013125 \| wig	GSM956030 \| wig
u87	hg19	H3K27ac	Enhancer/Rank	GSM894065 \| wig	GSM894096 \| wig
VACO 400	hg19	H3K27ac	Enhancer/Rank	GSM883684	GSM883666
VACO 503	hg19	H3K27ac	Enhancer/Rank	GSM883682	GSM883671
VACO 9m	hg19	H3K27ac	Enhancer/Rank	GSM883683	GSM883674
Embryonic stem cells	mm9	Oct4	Enhancer	GSM1082340 \| wig	GSM560357
Embryonic stem cells	mm9	Nanog	Enhancer	GSM1082342 \| wig	GSM560357
Embryonic stem cells	mm9	Sox2	Enhancer	GSM1082341 \| wig	GSM560357
Embryonic stem cells	mm9	Med1	Rank	GSM560348	GSM560357
pro-B Cells	mm9	Med1	Enhancer/Rank	GSM1038263 \| wig	GSM1038264
pro-B Cells	mm9	PU.1	Enhancer/Rank	GSM539538	GSM1038265
Myotubes	mm9	Myod1	Enhancer/Rank	GSM539540	GSM1082348
Th Cells	mm9	T-Bet	Enhancer/Rank	GSM836124	GSM989036 \| wig
Macrophage	mm9	C/EBPa	Enhancer/Rank	GSM537984	GSM537988
DHL6	hg19	H3K27AC	Enhancer/Rank	GSM1254194 \| wig (hg18)	GSM1254195 \| wig (hg18)
HBL1	hg19	H3K27AC	Enhancer/Rank	GSM1254196 \| wig (hg18)	GSM1254197 \| wig (hg18)
Ly1	hg19	H3K27ac	Enhancer/Rank	GSM1133646 \| wig (hg18)	GSM1133654 \| wig (hg18)
Ly3	hg19	H3K27AC	Enhancer/Rank	GSM1254198 \| wig (hg18)	GSM1254199 \| wig (hg18)
Ly4	hg19	H3K27AC	Enhancer/Rank	GSM1254200 \| wig (hg18)	GSM1254201 \| wig (hg18)
Toledo	hg19	H3K27AC	Enhancer/Rank	GSM1254202 \| wig (hg18)	GSM1254203 \| wig (hg18)
HSMM	hg19	H3K27ac	Enhancer/Rank	GSM733755 \| bigWig	GSM733663 \| bigWig
NHEK	hg19	H3K27ac	Enhancer/Rank	GSM646457	GSM646473
Pancreatic islets	hg19	H3K27ac	Enhancer/Rank	GSM1261672	GSM1261673
Hair follicle stem cells (HFSCs)	mm9	H3K27ac	Enhancer/Rank	GSM1502005 \| wig	GSM1502004 \| wig
Transit-amplifying cells (TACs)	mm9	H3K27ac	Enhancer/Rank	GSM1502001 \| wig	GSM1502000 \| wig
Ly1	hg19	BRD4	Rank	GSM1133650 \| wig (hg18)	GSM1133654 \| wig (hg18)
GLC16	hg19	H3K27ac	Enhancer/Rank	GSM1526704 \| wig	GSM1526701 \| wig
NCI-H82	hg19	H3K27ac	Enhancer/Rank	GSM1526706 \| wig	GSM1526702 \| wig
NCI-H69	hg19	H3K27ac	Enhancer/Rank	GSM1526703 \| wig	GSM1526705 \| wig
H2171	hg19	MED1	Enhancer/Rank	GSM894081 \| wig (hg18)	GSM894105 \| wig (hg18)
MM1S	hg19	MED1	Enhancer/Rank	GSM1038276 \| wig (hg18)	GSM894087 \| wig (hg18)
u87	hg19	MED1	Enhancer/Rank	GSM894082 \| wig (hg18)	GSM894096 \| wig (hg18)
Jurkat	hg19	H3K27ac	Enhancer/Rank	GSM1296384 \| wig (hg18)	GSM1296386 \| wig (hg18)
Bone Marrow	mm9	H3K27ac	Enhancer/Rank	GSM851270	GSM722640
Cerebellum	mm9	H3K27ac	Enhancer/Rank	GSM851271 \|	Deprecated: explode(): Passing null to parameter #2 ($string) of type string is deprecated in /home/isablsud/asntech.org/dbsuper/data_geo.php on line 121
Cortex	mm9	H3K27ac	Enhancer/Rank	GSM851272 \|	Deprecated: explode(): Passing null to parameter #2 ($string) of type string is deprecated in /home/isablsud/asntech.org/dbsuper/data_geo.php on line 121
E14.5 Brain	mm9	H3K27ac	Enhancer/Rank	GSM851284	GSM851285
E14.5 Heart	mm9	H3K27ac	Enhancer/Rank	GSM851290	GSM851291
E14.5 Limb	mm9	H3K27ac	Enhancer/Rank	GSM851296	GSM851297
E14.5 Liver	mm9	H3K27ac	Enhancer/Rank	GSM851302	GSM851303
Heart	mm9	H3K27ac	Enhancer/Rank	GSM851273	GSM722697
Intestine	mm9	H3K27ac	Enhancer/Rank	GSM851308	GSM851309
Kidney	mm9	H3K27ac	Enhancer/Rank	GSM851274	GSM722703
Liver	mm9	H3K27ac	Enhancer/Rank	GSM851275	GSM722764
Lung	mm9	H3K27ac	Enhancer/Rank	GSM851276	GSM722864
MEF	mm9	H3K27ac	Enhancer/Rank	GSM851277	GSM723008
Embryonic stem cells	mm9	H3K27ac	Enhancer/Rank	GSM851278	GSM723020
Olfactory bulb	mm9	H3K27ac	Enhancer/Rank	GSM851314	GSM851315
Placenta	mm9	H3K27ac	Enhancer/Rank	GSM851320	GSM851321
Spleen	mm9	H3K27ac	Enhancer/Rank	GSM851279	GSM722994
Testis	mm9	H3K27ac	Enhancer/Rank	GSM851326	GSM851327
Thymus	mm9	H3K27ac	Enhancer/Rank	GSM851332	GSM851333
H9	hg19	H3K27ac	Enhancer/Rank	GSM602294	GSM602292

References & Resources

Master transcription factors and mediator establish super-enhancers at key cell identity genes

Whyte WA, Orlando DA, Hnisz D, Abraham BJ, Lin CY, Kagey MH, Rahl PB, Lee TI, Young RA. 2013. Cell 153: 307–19.

Super-enhancers in the control of cell identity and disease

Hnisz D, Abraham BJ, Lee TI, Lau A, Saint-André V, Sigova AA., Hoke HA., Young RA. 2013. Cell 155: 934–47.

Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma

Chapuy B, McKeown MR, Lin CY, Monti S, Roemer MG, Qi J, Rahl PB, Sun HH, Yeda KT, Doench JG, Reichert E, Kung AL, Rodig SJ, Young RA, Shipp MA, Bradner JE. 2013. Cell 24: 777-790.

Selective inhibition of tumor oncogenes by disruption of super-enhancers

Lovén J, Hoke HA, Lin CY, Lau A, Orlando D A, Vakoc CR, Bradner JE, Lee TI, Young RA. 2013. Cell 153: 320–34.

Targeting Transcriptional Addictions in Small Cell Lung Cancer with a Covalent CDK7 Inhibitor

Christensen,C.L., Kwiatkowski,N., Abraham,B.J., et al. Cancer Cell 26: 909–922.