Super Enhancer Details

General details

Super-Enhancer ID:	SE_00001
Genomic locus:	chr1:120485363-120615071
Size/Length:	129708 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_024408
Gene Symbol:	NOTCH2
Chromosome:	chr1
TSS:	120454175 (Transcription start site)
TES:	120612317 (Transcription end site)
Strand:	-
Number of Exons:	34
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:120485363-120615071
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00001

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000394	SE_00001	chr1	120485363	120487146	1783	382.73
C000395	SE_00001	chr1	120487221	120493539	6318	1388.03
C000396	SE_00001	chr1	120493691	120495133	1442	157.35
C000397	SE_00001	chr1	120496999	120513521	16522	1281.21
C000398	SE_00001	chr1	120514325	120521265	6940	1193.47
C000399	SE_00001	chr1	120523339	120525772	2433	226.14
C000400	SE_00001	chr1	120526012	120543041	17029	3100
C000401	SE_00001	chr1	120545720	120570355	24635	3100
C000402	SE_00001	chr1	120570390	120583624	13234	3100
C000403	SE_00001	chr1	120583729	120615071	31342	3227.04