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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00002
Genomic locus: chr13:110838836-111112228
Size/Length: 273392 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001846
Gene Symbol: COL4A2
Chromosome: chr13
TSS: 110959630 (Transcription start site)
TES: 111165373 (Transcription end site)
Strand: +
Number of Exons: 48
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr13:110838836-111112228
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00002

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001892 SE_00002 chr13 110838836 110841546 2710 160.3
C001893 SE_00002 chr13 110842482 110845953 3471 622.27
C001894 SE_00002 chr13 110846678 110853622 6944 1108.48
C001895 SE_00002 chr13 110858872 110861123 2251 218.59
C001896 SE_00002 chr13 110861997 110864462 2465 258.53
C001897 SE_00002 chr13 110865171 110872120 6949 3100
C001898 SE_00002 chr13 110872239 110875255 3016 2514.76
C001899 SE_00002 chr13 110875473 110888065 12592 3100
C001900 SE_00002 chr13 110888270 110904977 16707 3100
C001901 SE_00002 chr13 110905936 110920194 14258 3061.49
C001902 SE_00002 chr13 110920344 110940562 20218 3100
C001903 SE_00002 chr13 110941622 110969358 27736 3100
C001904 SE_00002 chr13 110969420 110985055 15635 2198.41
C001905 SE_00002 chr13 110985418 110995754 10336 3100
C001906 SE_00002 chr13 110995780 111009569 13789 3100
C001907 SE_00002 chr13 111011374 111037908 26534 3075.94
C001908 SE_00002 chr13 111038168 111081448 43280 3100
C001909 SE_00002 chr13 111082679 111086678 3999 1063.25
C001910 SE_00002 chr13 111094627 111098657 4030 1213.84
C001911 SE_00002 chr13 111106540 111107504 964 96.16
C001912 SE_00002 chr13 111110101 111112228 2127 202.24