Super Enhancer Details

General details

Super-Enhancer ID:	SE_00004
Genomic locus:	chr5:158117077-158371526
Size/Length:	254449 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_024007
Gene Symbol:	EBF1
Chromosome:	chr5
TSS:	158122922 (Transcription start site)
TES:	158526788 (Transcription end site)
Strand:	-
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:158117077-158371526
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00004

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004944	SE_00004	chr5	158117077	158136700	19623	3100
C004945	SE_00004	chr5	158142295	158143644	1349	131.38
C004946	SE_00004	chr5	158144083	158158289	14206	3100
C004947	SE_00004	chr5	158159942	158168322	8380	573.45
C004948	SE_00004	chr5	158168346	158170068	1722	157.73
C004949	SE_00004	chr5	158171809	158189112	17303	3100
C004950	SE_00004	chr5	158189977	158218540	28563	3100
C004951	SE_00004	chr5	158218728	158277094	58366	2083.94
C004952	SE_00004	chr5	158279073	158318908	39835	1497.47
C004953	SE_00004	chr5	158319548	158353505	33957	823.54
C004954	SE_00004	chr5	158353686	158358831	5145	546.41
C004955	SE_00004	chr5	158359200	158371526	12326	3100