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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00005
Genomic locus: chr2:218548183-218895526
Size/Length: 347343 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_022648
Gene Symbol: TNS1
Chromosome: chr2
TSS: 218664511 (Transcription start site)
TES: 218808796 (Transcription end site)
Strand: -
Number of Exons: 33
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr2:218548183-218895526
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00005

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003571 SE_00005 chr2 218548183 218551213 3030 336.61
C003572 SE_00005 chr2 218558618 218561611 2993 298.08
C003573 SE_00005 chr2 218569473 218573031 3558 448.8
C003574 SE_00005 chr2 218577278 218580523 3245 509.69
C003575 SE_00005 chr2 218586861 218589597 2736 407.5
C003576 SE_00005 chr2 218592929 218615253 22324 3100
C003577 SE_00005 chr2 218615599 218623024 7425 1781.33
C003578 SE_00005 chr2 218623054 218624763 1709 201.26
C003579 SE_00005 chr2 218630746 218632243 1497 139.82
C003580 SE_00005 chr2 218636090 218645185 9095 2726.18
C003581 SE_00005 chr2 218647042 218650410 3368 425.69
C003582 SE_00005 chr2 218652544 218667684 15140 1769.86
C003583 SE_00005 chr2 218668611 218672243 3632 447.72
C003584 SE_00005 chr2 218676398 218731742 55344 724.97
C003585 SE_00005 chr2 218732711 218744435 11724 1251.41
C003586 SE_00005 chr2 218744801 218746840 2039 312.04
C003587 SE_00005 chr2 218749169 218810848 61679 3100
C003588 SE_00005 chr2 218814233 218816533 2300 264.74
C003589 SE_00005 chr2 218816981 218819519 2538 423.86
C003590 SE_00005 chr2 218828585 218830166 1581 104.53
C003591 SE_00005 chr2 218833310 218835154 1844 259.89
C003592 SE_00005 chr2 218835752 218837644 1892 214.89
C003593 SE_00005 chr2 218837675 218840730 3055 342.96
C003594 SE_00005 chr2 218842153 218848947 6794 1756.86
C003595 SE_00005 chr2 218851393 218855085 3692 1500.57
C003596 SE_00005 chr2 218855815 218870878 15063 3100
C003597 SE_00005 chr2 218881610 218883619 2009 425.07
C003598 SE_00005 chr2 218893280 218895526 2246 174.98