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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00006
Genomic locus: chr2:54586565-54904699
Size/Length: 318134 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_178313
Gene Symbol: SPTBN1
Chromosome: chr2
TSS: 54683453 (Transcription start site)
TES: 54898583 (Transcription end site)
Strand: +
Number of Exons: 36
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr2:54586565-54904699
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00006

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003231 SE_00006 chr2 54586565 54588688 2123 341.05
C003232 SE_00006 chr2 54594566 54595688 1122 126.5
C003233 SE_00006 chr2 54596289 54600220 3931 3054.52
C003234 SE_00006 chr2 54612673 54615788 3115 1522.04
C003235 SE_00006 chr2 54628039 54630995 2956 734.15
C003236 SE_00006 chr2 54642148 54645750 3602 1041.72
C003237 SE_00006 chr2 54646293 54648096 1803 289.74
C003238 SE_00006 chr2 54654073 54668552 14479 3100
C003239 SE_00006 chr2 54681016 54712607 31591 2471.85
C003240 SE_00006 chr2 54713757 54722548 8791 1023.34
C003241 SE_00006 chr2 54723196 54733250 10054 3100
C003242 SE_00006 chr2 54733264 54734298 1034 95.27
C003243 SE_00006 chr2 54736756 54739014 2258 322.79
C003244 SE_00006 chr2 54739087 54742304 3217 382.83
C003245 SE_00006 chr2 54745573 54749030 3457 632.42
C003246 SE_00006 chr2 54749515 54755730 6215 1824.56
C003247 SE_00006 chr2 54756483 54765677 9194 2322.64
C003248 SE_00006 chr2 54766758 54771961 5203 956.83
C003249 SE_00006 chr2 54772049 54774744 2695 1138.37
C003250 SE_00006 chr2 54775123 54776512 1389 95.91
C003251 SE_00006 chr2 54777336 54779471 2135 262.57
C003252 SE_00006 chr2 54779620 54790476 10856 3100
C003253 SE_00006 chr2 54791627 54793655 2028 212.93
C003254 SE_00006 chr2 54795695 54808079 12384 3100
C003255 SE_00006 chr2 54809720 54811291 1571 145.43
C003256 SE_00006 chr2 54811575 54819309 7734 3097.91
C003257 SE_00006 chr2 54819448 54821192 1744 197.19
C003258 SE_00006 chr2 54821772 54834554 12782 3100
C003259 SE_00006 chr2 54838665 54870676 32011 1962.76
C003260 SE_00006 chr2 54872242 54873725 1483 95.68
C003261 SE_00006 chr2 54874575 54875716 1141 103.1
C003262 SE_00006 chr2 54877217 54878513 1296 92.53
C003263 SE_00006 chr2 54879436 54881172 1736 215.62
C003264 SE_00006 chr2 54881352 54882745 1393 118.48
C003265 SE_00006 chr2 54883221 54889195 5974 1134.54
C003266 SE_00006 chr2 54889361 54902217 12856 3100
C003267 SE_00006 chr2 54903456 54904699 1243 105.22