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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00007
Genomic locus: chr6:112420456-112652968
Size/Length: 232512 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_002290
Gene Symbol: LAMA4
Chromosome: chr6
TSS: 112429133 (Transcription start site)
TES: 112575917 (Transcription end site)
Strand: -
Number of Exons: 39
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr6:112420456-112652968
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00007

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005200 SE_00007 chr6 112420456 112423838 3382 421.95
C005201 SE_00007 chr6 112433920 112436627 2707 337.54
C005202 SE_00007 chr6 112436793 112439860 3067 205.06
C005203 SE_00007 chr6 112440313 112441920 1607 117.46
C005204 SE_00007 chr6 112446149 112447845 1696 143.08
C005205 SE_00007 chr6 112456884 112459236 2352 200.93
C005206 SE_00007 chr6 112459857 112469932 10075 1097.2
C005207 SE_00007 chr6 112470478 112483688 13210 784.02
C005208 SE_00007 chr6 112484246 112488278 4032 230.84
C005209 SE_00007 chr6 112493585 112495111 1526 101.44
C005210 SE_00007 chr6 112495159 112497752 2593 189.96
C005211 SE_00007 chr6 112499613 112503270 3657 1725.83
C005212 SE_00007 chr6 112503482 112506151 2669 611.89
C005213 SE_00007 chr6 112506180 112521675 15495 778.04
C005214 SE_00007 chr6 112521985 112561864 39879 3100
C005215 SE_00007 chr6 112561981 112577185 15204 3100
C005216 SE_00007 chr6 112587032 112592495 5463 3100
C005217 SE_00007 chr6 112600349 112604987 4638 1061.79
C005218 SE_00007 chr6 112608874 112614026 5152 1632.11
C005219 SE_00007 chr6 112616594 112623239 6645 3100
C005220 SE_00007 chr6 112628597 112633953 5356 3100
C005221 SE_00007 chr6 112642499 112644101 1602 179.55
C005222 SE_00007 chr6 112646018 112647692 1674 102.48
C005223 SE_00007 chr6 112650920 112652968 2048 226.12