Super Enhancer Details

General details

Super-Enhancer ID:	SE_00008
Genomic locus:	chr3:12327760-12522419
Size/Length:	194659 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015869
Gene Symbol:	PPARG
Chromosome:	chr3
TSS:	12329348 (Transcription start site)
TES:	12475855 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:12327760-12522419
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00008

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003957	SE_00008	chr3	12327760	12366515	38755	3100
C003958	SE_00008	chr3	12367051	12371244	4193	1060.05
C003959	SE_00008	chr3	12371274	12403887	32613	3100
C003960	SE_00008	chr3	12403975	12406550	2575	1128.23
C003961	SE_00008	chr3	12407396	12409333	1937	225.33
C003962	SE_00008	chr3	12409423	12423379	13956	3100
C003963	SE_00008	chr3	12423444	12428125	4681	627.42
C003964	SE_00008	chr3	12429155	12441182	12027	3100
C003965	SE_00008	chr3	12441204	12455629	14425	3167.4
C003966	SE_00008	chr3	12455646	12460981	5335	1452.42
C003967	SE_00008	chr3	12460982	12474620	13638	1540.31
C003968	SE_00008	chr3	12474722	12483905	9183	3100
C003969	SE_00008	chr3	12483946	12486309	2363	153.04
C003970	SE_00008	chr3	12491038	12492440	1402	147.62
C003971	SE_00008	chr3	12492671	12498521	5850	2399.68
C003972	SE_00008	chr3	12499168	12506230	7062	2142.95
C003973	SE_00008	chr3	12516742	12520152	3410	1354.51
C003974	SE_00008	chr3	12520648	12522419	1771	216.16