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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00009
Genomic locus: chr1:12455848-12698932
Size/Length: 243084 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_004753
Gene Symbol: DHRS3
Chromosome: chr1
TSS: 12627938 (Transcription start site)
TES: 12677737 (Transcription end site)
Strand: -
Number of Exons: 6
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr1:12455848-12698932
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00009

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000036 SE_00009 chr1 12455848 12457012 1164 100.78
C000037 SE_00009 chr1 12460359 12471039 10680 3100
C000038 SE_00009 chr1 12482159 12485768 3609 1526.73
C000039 SE_00009 chr1 12492605 12496972 4367 2587.4
C000040 SE_00009 chr1 12506389 12526105 19716 3100
C000041 SE_00009 chr1 12533379 12542797 9418 3100
C000042 SE_00009 chr1 12544070 12547988 3918 2051.48
C000043 SE_00009 chr1 12555946 12557524 1578 160.29
C000044 SE_00009 chr1 12558164 12562216 4052 1323.83
C000045 SE_00009 chr1 12569138 12573077 3939 2238.21
C000046 SE_00009 chr1 12578191 12582080 3889 1245.59
C000047 SE_00009 chr1 12583057 12587094 4037 2478.92
C000048 SE_00009 chr1 12587279 12589993 2714 992.97
C000049 SE_00009 chr1 12599084 12603277 4193 1626.76
C000050 SE_00009 chr1 12606386 12610634 4248 1064.56
C000051 SE_00009 chr1 12612289 12614091 1802 177.94
C000052 SE_00009 chr1 12614857 12619344 4487 1571.8
C000053 SE_00009 chr1 12624703 12626577 1874 195.6
C000054 SE_00009 chr1 12626713 12627901 1188 136
C000055 SE_00009 chr1 12629915 12631643 1728 205.68
C000056 SE_00009 chr1 12632151 12635403 3252 928.71
C000057 SE_00009 chr1 12638764 12642881 4117 2002.68
C000058 SE_00009 chr1 12643999 12666289 22290 3100
C000059 SE_00009 chr1 12667652 12683266 15614 3100
C000060 SE_00009 chr1 12694611 12698932 4321 1538.12