Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00010
Genomic locus: chr8:30239218-30455499
Size/Length: 216281 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001008712
Gene Symbol: RBPMS
Chromosome: chr8
TSS: 30242016 (Transcription start site)
TES: 30429778 (Transcription end site)
Strand: +
Number of Exons: 10
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr8:30239218-30455499
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00010

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005677 SE_00010 chr8 30239218 30257883 18665 3100
C005678 SE_00010 chr8 30257946 30267565 9619 3100
C005679 SE_00010 chr8 30267641 30279625 11984 3100
C005680 SE_00010 chr8 30279697 30282582 2885 782.9
C005681 SE_00010 chr8 30282731 30285518 2787 674.95
C005682 SE_00010 chr8 30285566 30301294 15728 3130.35
C005683 SE_00010 chr8 30301674 30302577 903 116.13
C005684 SE_00010 chr8 30304425 30312169 7744 837.75
C005685 SE_00010 chr8 30312295 30313420 1125 102.78
C005686 SE_00010 chr8 30313966 30317676 3710 363.61
C005687 SE_00010 chr8 30318068 30323448 5380 827.43
C005688 SE_00010 chr8 30324244 30327990 3746 1695.55
C005689 SE_00010 chr8 30329081 30331109 2028 152.31
C005690 SE_00010 chr8 30331695 30347071 15376 2486.85
C005691 SE_00010 chr8 30347576 30364493 16917 2100.66
C005692 SE_00010 chr8 30369139 30370726 1587 123.53
C005693 SE_00010 chr8 30374205 30376207 2002 172.68
C005694 SE_00010 chr8 30381779 30385785 4006 533.6
C005695 SE_00010 chr8 30388692 30390053 1361 101.9
C005696 SE_00010 chr8 30390186 30392790 2604 338.41
C005697 SE_00010 chr8 30393754 30395451 1697 156.97
C005698 SE_00010 chr8 30395725 30397388 1663 114.64
C005699 SE_00010 chr8 30397818 30411276 13458 3100
C005700 SE_00010 chr8 30411449 30413565 2116 239.88
C005701 SE_00010 chr8 30416732 30423315 6583 2293.22
C005702 SE_00010 chr8 30425235 30427181 1946 181.72
C005703 SE_00010 chr8 30428439 30430278 1839 118.92
C005704 SE_00010 chr8 30431501 30432846 1345 149.59
C005705 SE_00010 chr8 30441453 30442609 1156 101.55
C005706 SE_00010 chr8 30453420 30455499 2079 189.81