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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00011
Genomic locus: chr11:111468184-111670113
Size/Length: 201929 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_181700
Gene Symbol: PPP2R1B
Chromosome: chr11
TSS: 111608604 (Transcription start site)
TES: 111637169 (Transcription end site)
Strand: -
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr11:111468184-111670113
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00011

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001427 SE_00011 chr11 111468184 111470341 2157 210.71
C001428 SE_00011 chr11 111471745 111479809 8064 3100
C001429 SE_00011 chr11 111479915 111481045 1130 104.09
C001430 SE_00011 chr11 111481395 111483642 2247 772.76
C001431 SE_00011 chr11 111483783 111485028 1245 156
C001432 SE_00011 chr11 111490084 111491779 1695 143.81
C001433 SE_00011 chr11 111494540 111497038 2498 524.82
C001434 SE_00011 chr11 111500794 111513680 12886 2868.54
C001435 SE_00011 chr11 111523135 111528026 4891 665.04
C001436 SE_00011 chr11 111529082 111531431 2349 190.31
C001437 SE_00011 chr11 111533648 111536306 2658 181.22
C001438 SE_00011 chr11 111538494 111540098 1604 201.84
C001439 SE_00011 chr11 111544844 111553797 8953 2868.24
C001440 SE_00011 chr11 111554179 111555749 1570 92.78
C001441 SE_00011 chr11 111558342 111559948 1606 221
C001442 SE_00011 chr11 111561491 111563021 1530 190.08
C001443 SE_00011 chr11 111563655 111572753 9098 777.99
C001444 SE_00011 chr11 111575690 111579402 3712 1389.95
C001445 SE_00011 chr11 111579647 111581202 1555 102.9
C001446 SE_00011 chr11 111581664 111583508 1844 155.64
C001447 SE_00011 chr11 111588345 111592492 4147 1863.34
C001448 SE_00011 chr11 111594254 111596371 2117 164.65
C001449 SE_00011 chr11 111596454 111622090 25636 3100
C001450 SE_00011 chr11 111622299 111638905 16606 3100
C001451 SE_00011 chr11 111644861 111649591 4730 1790.59
C001452 SE_00011 chr11 111655957 111657508 1551 124.26
C001453 SE_00011 chr11 111663869 111670113 6244 1513.22