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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00012
Genomic locus: chr10:82143428-82297600
Size/Length: 154172 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001128309
Gene Symbol: TSPAN14
Chromosome: chr10
TSS: 82214037 (Transcription start site)
TES: 82282391 (Transcription end site)
Strand: +
Number of Exons: 9
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr10:82143428-82297600
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00012

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000955 SE_00012 chr10 82143428 82144515 1087 111.24
C000956 SE_00012 chr10 82145307 82149370 4063 458.21
C000957 SE_00012 chr10 82159492 82160884 1392 282.28
C000958 SE_00012 chr10 82164278 82178271 13993 3100
C000959 SE_00012 chr10 82178908 82184245 5337 750.75
C000960 SE_00012 chr10 82188515 82189876 1361 149.12
C000961 SE_00012 chr10 82191003 82192074 1071 116.55
C000962 SE_00012 chr10 82194852 82199371 4519 1237.64
C000963 SE_00012 chr10 82202009 82205073 3064 893.46
C000964 SE_00012 chr10 82211895 82238814 26919 3100
C000965 SE_00012 chr10 82242422 82272741 30319 3100
C000966 SE_00012 chr10 82273409 82281779 8370 1455.75
C000967 SE_00012 chr10 82283382 82284276 894 90.89
C000968 SE_00012 chr10 82287615 82291096 3481 378.35
C000969 SE_00012 chr10 82295127 82297600 2473 367.23