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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00013
Genomic locus: chr2:145147464-145289272
Size/Length: 141808 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001171653
Gene Symbol: ZEB2
Chromosome: chr2
TSS: 145268951 (Transcription start site)
TES: 145277958 (Transcription end site)
Strand: -
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr2:145147464-145289272
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00013

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003419 SE_00013 chr2 145147464 145149340 1876 165.6
C003420 SE_00013 chr2 145149470 145151002 1532 102.92
C003421 SE_00013 chr2 145152653 145154991 2338 260.94
C003422 SE_00013 chr2 145157241 145158631 1390 141.11
C003423 SE_00013 chr2 145158871 145167598 8727 345.26
C003424 SE_00013 chr2 145168392 145174912 6520 3100
C003425 SE_00013 chr2 145178349 145180483 2134 223.32
C003426 SE_00013 chr2 145181575 145186701 5126 869.05
C003427 SE_00013 chr2 145186722 145189872 3150 379.86
C003428 SE_00013 chr2 145190407 145200277 9870 640.26
C003429 SE_00013 chr2 145200495 145203213 2718 348.22
C003430 SE_00013 chr2 145203245 145205536 2291 115.44
C003431 SE_00013 chr2 145205598 145208103 2505 366.66
C003432 SE_00013 chr2 145208646 145220907 12261 3100
C003433 SE_00013 chr2 145224169 145226802 2633 270.67
C003434 SE_00013 chr2 145226855 145234212 7357 540.8
C003435 SE_00013 chr2 145234247 145243408 9161 3100
C003436 SE_00013 chr2 145244321 145245628 1307 97.51
C003437 SE_00013 chr2 145248888 145255468 6580 2072
C003438 SE_00013 chr2 145255685 145289272 33587 3100