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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00014
Genomic locus: chr1:92148226-92358240
Size/Length: 210014 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_003243
Gene Symbol: TGFBR3
Chromosome: chr1
TSS: 92145899 (Transcription start site)
TES: 92351836 (Transcription end site)
Strand: -
Number of Exons: 17
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr1:92148226-92358240
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00014

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000288 SE_00014 chr1 92148226 92168040 19814 3100
C000289 SE_00014 chr1 92168186 92171452 3266 784.07
C000290 SE_00014 chr1 92172164 92175136 2972 201.04
C000291 SE_00014 chr1 92175199 92181365 6166 2675.96
C000292 SE_00014 chr1 92181431 92182949 1518 128.91
C000293 SE_00014 chr1 92183076 92187773 4697 776.46
C000294 SE_00014 chr1 92189277 92199687 10410 1362.07
C000295 SE_00014 chr1 92200001 92204049 4048 843.57
C000296 SE_00014 chr1 92206578 92231348 24770 1882.77
C000297 SE_00014 chr1 92233886 92236603 2717 588.59
C000298 SE_00014 chr1 92237368 92238798 1430 202.89
C000299 SE_00014 chr1 92240184 92242027 1843 250.59
C000300 SE_00014 chr1 92242971 92251518 8547 2089.37
C000301 SE_00014 chr1 92253287 92254720 1433 153.81
C000302 SE_00014 chr1 92256873 92259197 2324 195.7
C000303 SE_00014 chr1 92259869 92265585 5716 891
C000304 SE_00014 chr1 92266356 92273792 7436 1349.03
C000305 SE_00014 chr1 92278389 92286340 7951 1932.81
C000306 SE_00014 chr1 92286986 92288293 1307 101.92
C000307 SE_00014 chr1 92292647 92294458 1811 170.77
C000308 SE_00014 chr1 92294933 92298165 3232 876.67
C000309 SE_00014 chr1 92299206 92301537 2331 343.67
C000310 SE_00014 chr1 92304431 92306773 2342 259.88
C000311 SE_00014 chr1 92307323 92313117 5794 3100
C000312 SE_00014 chr1 92313589 92315172 1583 119.09
C000313 SE_00014 chr1 92315345 92317993 2648 879.35
C000314 SE_00014 chr1 92321817 92322950 1133 135.76
C000315 SE_00014 chr1 92327428 92331038 3610 1281.32
C000316 SE_00014 chr1 92331142 92334966 3824 554.9
C000317 SE_00014 chr1 92335013 92339243 4230 1349.93
C000318 SE_00014 chr1 92339765 92345499 5734 2158.8
C000319 SE_00014 chr1 92346175 92347591 1416 210.74
C000320 SE_00014 chr1 92347843 92352732 4889 2955.64
C000321 SE_00014 chr1 92356368 92358240 1872 114.77