Super Enhancer Details

General details

Super-Enhancer ID:	SE_00016
Genomic locus:	chr10:97067610-97208276
Size/Length:	140666 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020992
Gene Symbol:	PDLIM1
Chromosome:	chr10
TSS:	96997324 (Transcription start site)
TES:	97050905 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:97067610-97208276
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00016

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001002	SE_00016	chr10	97067610	97070683	3073	519.04
C001003	SE_00016	chr10	97072941	97074486	1545	99.4
C001004	SE_00016	chr10	97086329	97092048	5719	1481.39
C001005	SE_00016	chr10	97092311	97098573	6262	3100
C001006	SE_00016	chr10	97098749	97102038	3289	428.3
C001007	SE_00016	chr10	97103279	97116499	13220	3100
C001008	SE_00016	chr10	97118421	97126513	8092	1949.35
C001009	SE_00016	chr10	97127665	97129995	2330	165.96
C001010	SE_00016	chr10	97130416	97184057	53641	3100
C001011	SE_00016	chr10	97188046	97189522	1476	294.57
C001012	SE_00016	chr10	97192769	97196141	3372	586.09
C001013	SE_00016	chr10	97204162	97208276	4114	581.5