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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00017
Genomic locus: chr9:14132520-14325750
Size/Length: 193230 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001190737
Gene Symbol: NFIB
Chromosome: chr9
TSS: 14081841 (Transcription start site)
TES: 14398982 (Transcription end site)
Strand: -
Number of Exons: 9
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr9:14132520-14325750
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00017

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005861 SE_00017 chr9 14132520 14134381 1861 165.41
C005862 SE_00017 chr9 14138442 14140719 2277 158.13
C005863 SE_00017 chr9 14148207 14150505 2298 103.39
C005864 SE_00017 chr9 14154140 14157698 3558 487.81
C005865 SE_00017 chr9 14158011 14160173 2162 242.6
C005866 SE_00017 chr9 14160364 14161938 1574 101.88
C005867 SE_00017 chr9 14163661 14166013 2352 180.53
C005868 SE_00017 chr9 14177402 14183155 5753 1203.98
C005869 SE_00017 chr9 14186656 14188116 1460 131.41
C005870 SE_00017 chr9 14192525 14204632 12107 3100
C005871 SE_00017 chr9 14205281 14208282 3001 307.91
C005872 SE_00017 chr9 14208369 14215379 7010 1304.54
C005873 SE_00017 chr9 14217331 14222730 5399 839.64
C005874 SE_00017 chr9 14230174 14231123 949 152.55
C005875 SE_00017 chr9 14231205 14232208 1003 92.22
C005876 SE_00017 chr9 14234682 14242222 7540 3100
C005877 SE_00017 chr9 14249174 14252700 3526 1046.17
C005878 SE_00017 chr9 14255197 14260962 5765 1274.75
C005879 SE_00017 chr9 14261293 14265839 4546 1024.22
C005880 SE_00017 chr9 14268161 14279417 11256 2147.83
C005881 SE_00017 chr9 14282020 14284152 2132 230.57
C005882 SE_00017 chr9 14286108 14287177 1069 132.44
C005883 SE_00017 chr9 14287465 14291323 3858 602.13
C005884 SE_00017 chr9 14291409 14303463 12054 2393.53
C005885 SE_00017 chr9 14305995 14325750 19755 3100