Super Enhancer Details

General details

Super-Enhancer ID:	SE_00020
Genomic locus:	chr15:62681468-62918670
Size/Length:	237202 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_026897
Gene Symbol:	MGC15885
Chromosome:	chr15
TSS:	62929370 (Transcription start site)
TES:	62937380 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:62681468-62918670
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00020

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002236	SE_00020	chr15	62681468	62689120	7652	3100
C002237	SE_00020	chr15	62694567	62697889	3322	683.5
C002238	SE_00020	chr15	62709666	62710940	1274	108.24
C002239	SE_00020	chr15	62717962	62726652	8690	2120.21
C002240	SE_00020	chr15	62730077	62734251	4174	1560.76
C002241	SE_00020	chr15	62734845	62738235	3390	1021.36
C002242	SE_00020	chr15	62739653	62741268	1615	151.95
C002243	SE_00020	chr15	62745218	62747469	2251	304.8
C002244	SE_00020	chr15	62754309	62755723	1414	117.58
C002245	SE_00020	chr15	62757882	62759833	1951	288.18
C002246	SE_00020	chr15	62760863	62769474	8611	3100
C002247	SE_00020	chr15	62774836	62779886	5050	1514.38
C002248	SE_00020	chr15	62780051	62781349	1298	187.95
C002249	SE_00020	chr15	62783214	62800252	17038	1722.09
C002250	SE_00020	chr15	62800788	62802632	1844	137.42
C002251	SE_00020	chr15	62808154	62810514	2360	225.6
C002252	SE_00020	chr15	62811087	62812559	1472	91.88
C002253	SE_00020	chr15	62814394	62821435	7041	842.49
C002254	SE_00020	chr15	62823825	62829499	5674	1643.88
C002255	SE_00020	chr15	62830783	62831742	959	96.69
C002256	SE_00020	chr15	62832980	62834393	1413	189.96
C002257	SE_00020	chr15	62836703	62841514	4811	3100
C002258	SE_00020	chr15	62841546	62843140	1594	95.01
C002259	SE_00020	chr15	62849975	62852949	2974	749.42
C002260	SE_00020	chr15	62853342	62854641	1299	143.06
C002261	SE_00020	chr15	62857018	62858364	1346	132.14
C002262	SE_00020	chr15	62860319	62865718	5399	3100
C002263	SE_00020	chr15	62874303	62879751	5448	952.06
C002264	SE_00020	chr15	62880968	62882184	1216	93.71
C002265	SE_00020	chr15	62883229	62886224	2995	407.94
C002266	SE_00020	chr15	62891585	62902067	10482	3230.05
C002267	SE_00020	chr15	62909105	62912459	3354	620.11
C002268	SE_00020	chr15	62915607	62918670	3063	641