Super Enhancer Details

General details

Super-Enhancer ID:	SE_00021
Genomic locus:	chr9:124030416-124136617
Size/Length:	106201 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000177
Gene Symbol:	GSN
Chromosome:	chr9
TSS:	124030379 (Transcription start site)
TES:	124095120 (Transcription end site)
Strand:	+
Number of Exons:	19
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:124030416-124136617
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00021

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006032	SE_00021	chr9	124030416	124033297	2881	530.18
C006033	SE_00021	chr9	124033746	124035428	1682	141.83
C006034	SE_00021	chr9	124039461	124041776	2315	299.01
C006035	SE_00021	chr9	124042059	124053303	11244	3100
C006036	SE_00021	chr9	124053713	124073824	20111	3100
C006037	SE_00021	chr9	124075039	124076726	1687	95.81
C006038	SE_00021	chr9	124077925	124100205	22280	3100
C006039	SE_00021	chr9	124100868	124102057	1189	90.67
C006040	SE_00021	chr9	124106720	124108223	1503	188.48
C006041	SE_00021	chr9	124108447	124117504	9057	2198.41
C006042	SE_00021	chr9	124117673	124119709	2036	242.63
C006043	SE_00021	chr9	124120250	124136617	16367	3100