Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00022
Genomic locus: chr9:112747903-112917636
Size/Length: 169733 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001004065
Gene Symbol: AKAP2
Chromosome: chr9
TSS: 112810877 (Transcription start site)
TES: 112934791 (Transcription end site)
Strand: +
Number of Exons: 5
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr9:112747903-112917636
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00022

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005995 SE_00022 chr9 112747903 112750687 2784 310.22
C005996 SE_00022 chr9 112755463 112759206 3743 407.25
C005997 SE_00022 chr9 112759672 112761222 1550 250.08
C005998 SE_00022 chr9 112768999 112770604 1605 126.58
C005999 SE_00022 chr9 112777640 112779392 1752 241.15
C006000 SE_00022 chr9 112783187 112784994 1807 293.95
C006001 SE_00022 chr9 112787402 112794812 7410 3100
C006002 SE_00022 chr9 112795145 112796534 1389 154.05
C006003 SE_00022 chr9 112797937 112799937 2000 188.64
C006004 SE_00022 chr9 112801493 112806078 4585 1409.34
C006005 SE_00022 chr9 112809142 112816729 7587 2895.86
C006006 SE_00022 chr9 112817512 112822744 5232 986.62
C006007 SE_00022 chr9 112823075 112823868 793 109.19
C006008 SE_00022 chr9 112825689 112838792 13103 3100
C006009 SE_00022 chr9 112838833 112841876 3043 512.39
C006010 SE_00022 chr9 112842014 112847466 5452 887.33
C006011 SE_00022 chr9 112849324 112850699 1375 129.07
C006012 SE_00022 chr9 112851121 112853386 2265 368.85
C006013 SE_00022 chr9 112854623 112859271 4648 980.21
C006014 SE_00022 chr9 112860186 112868856 8670 2310.72
C006015 SE_00022 chr9 112871176 112872798 1622 253.23
C006016 SE_00022 chr9 112874047 112880520 6473 3100
C006017 SE_00022 chr9 112883193 112884376 1183 150.99
C006018 SE_00022 chr9 112884388 112908181 23793 2755.87
C006019 SE_00022 chr9 112908451 112917636 9185 1097.52