Super Enhancer Details

General details

Super-Enhancer ID:	SE_00023
Genomic locus:	chr5:158457028-158534580
Size/Length:	77552 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_024007
Gene Symbol:	EBF1
Chromosome:	chr5
TSS:	158122922 (Transcription start site)
TES:	158526788 (Transcription end site)
Strand:	-
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:158457028-158534580
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00023

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004956	SE_00023	chr5	158457028	158463533	6505	3100
C004957	SE_00023	chr5	158464758	158506951	42193	3100
C004958	SE_00023	chr5	158510321	158532053	21732	3100
C004959	SE_00023	chr5	158532519	158534580	2061	521.05