Super Enhancer Details

General details

Super-Enhancer ID:	SE_00024
Genomic locus:	chr19:13106663-13216504
Size/Length:	109841 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005583
Gene Symbol:	LYL1
Chromosome:	chr19
TSS:	13209841 (Transcription start site)
TES:	13213974 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:13106663-13216504
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00024

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002974	SE_00024	chr19	13106663	13152679	46016	3100
C002975	SE_00024	chr19	13154395	13156098	1703	264.85
C002976	SE_00024	chr19	13157646	13159331	1685	128.07
C002977	SE_00024	chr19	13160708	13176960	16252	3100
C002978	SE_00024	chr19	13179755	13181254	1499	128.61
C002979	SE_00024	chr19	13181295	13183434	2139	243.81
C002980	SE_00024	chr19	13186400	13187475	1075	91.32
C002981	SE_00024	chr19	13188702	13190936	2234	350
C002982	SE_00024	chr19	13199869	13205773	5904	1913.33
C002983	SE_00024	chr19	13209092	13216504	7412	1663.9