Super Enhancer Details

General details

Super-Enhancer ID:	SE_00025
Genomic locus:	chr3:127414600-127543388
Size/Length:	128788 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_007283
Gene Symbol:	MGLL
Chromosome:	chr3
TSS:	127407904 (Transcription start site)
TES:	127541725 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:127414600-127543388
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00025

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004293	SE_00025	chr3	127414600	127422329	7729	3100
C004294	SE_00025	chr3	127424584	127443279	18695	941.25
C004295	SE_00025	chr3	127443280	127445094	1814	173.09
C004296	SE_00025	chr3	127446474	127470765	24291	1777.95
C004297	SE_00025	chr3	127471995	127475518	3523	597.84
C004298	SE_00025	chr3	127478132	127481797	3665	651.67
C004299	SE_00025	chr3	127483267	127497327	14060	1746.98
C004300	SE_00025	chr3	127497909	127513147	15238	605.76
C004301	SE_00025	chr3	127514740	127520181	5441	510.78
C004302	SE_00025	chr3	127520917	127525087	4170	683.22
C004303	SE_00025	chr3	127531469	127543388	11919	3100