Super Enhancer Details

General details

Super-Enhancer ID:	SE_00026
Genomic locus:	chr7:80212197-80311799
Size/Length:	99602 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001001548
Gene Symbol:	CD36
Chromosome:	chr7
TSS:	80275761 (Transcription start site)
TES:	80303734 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr7:80212197-80311799
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00026

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005405	SE_00026	chr7	80212197	80215322	3125	571.46
C005406	SE_00026	chr7	80216397	80220314	3917	607.47
C005407	SE_00026	chr7	80222763	80224649	1886	390.63
C005408	SE_00026	chr7	80224668	80227896	3228	386.48
C005409	SE_00026	chr7	80228145	80246237	18092	2047.52
C005410	SE_00026	chr7	80249029	80254230	5201	1252.26
C005411	SE_00026	chr7	80255898	80257521	1623	92.06
C005412	SE_00026	chr7	80258339	80297223	38884	3100
C005413	SE_00026	chr7	80297366	80298776	1410	195.28
C005414	SE_00026	chr7	80298847	80301879	3032	459.21
C005415	SE_00026	chr7	80302568	80311799	9231	1276.85