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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00027
Genomic locus: chr1:61541623-61748432
Size/Length: 206809 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_005595
Gene Symbol: NFIA
Chromosome: chr1
TSS: 61547979 (Transcription start site)
TES: 61928460 (Transcription end site)
Strand: +
Number of Exons: 10
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr1:61541623-61748432
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00027

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000201 SE_00027 chr1 61541623 61555606 13983 3100
C000202 SE_00027 chr1 61555646 61561680 6034 2092.63
C000203 SE_00027 chr1 61566541 61571425 4884 1679.69
C000204 SE_00027 chr1 61575337 61578081 2744 331.86
C000205 SE_00027 chr1 61580715 61583578 2863 259.95
C000206 SE_00027 chr1 61583846 61591945 8099 1058.17
C000207 SE_00027 chr1 61596925 61599013 2088 257.47
C000208 SE_00027 chr1 61604555 61610842 6287 3100
C000209 SE_00027 chr1 61621745 61624250 2505 378.68
C000210 SE_00027 chr1 61635293 61640570 5277 670.25
C000211 SE_00027 chr1 61646737 61655232 8495 3100
C000212 SE_00027 chr1 61655909 61657635 1726 300.85
C000213 SE_00027 chr1 61658072 61659947 1875 301.49
C000214 SE_00027 chr1 61660147 61662203 2056 102.01
C000215 SE_00027 chr1 61667318 61670024 2706 1048.86
C000216 SE_00027 chr1 61678243 61682644 4401 3100
C000217 SE_00027 chr1 61682694 61684661 1967 739.71
C000218 SE_00027 chr1 61685566 61689539 3973 827.52
C000219 SE_00027 chr1 61689745 61694918 5173 1798.7
C000220 SE_00027 chr1 61703165 61711137 7972 2601.1
C000221 SE_00027 chr1 61718110 61721959 3849 3100
C000222 SE_00027 chr1 61722048 61723147 1099 132.59
C000223 SE_00027 chr1 61723765 61726328 2563 411.33
C000224 SE_00027 chr1 61726529 61728712 2183 279.31
C000225 SE_00027 chr1 61738364 61742292 3928 598.31
C000226 SE_00027 chr1 61742499 61746924 4425 1375.81
C000227 SE_00027 chr1 61747201 61748432 1231 153.15