Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00029
Genomic locus: chr8:62494289-62637126
Size/Length: 142837 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001164750
Gene Symbol: ASPH
Chromosome: chr8
TSS: 62536268 (Transcription start site)
TES: 62602408 (Transcription end site)
Strand: -
Number of Exons: 14
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr8:62494289-62637126
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00029

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005741 SE_00029 chr8 62494289 62495582 1293 91.18
C005742 SE_00029 chr8 62502893 62505987 3094 466.51
C005743 SE_00029 chr8 62506851 62509953 3102 807.75
C005744 SE_00029 chr8 62515739 62519205 3466 766.55
C005745 SE_00029 chr8 62519277 62521326 2049 126.18
C005746 SE_00029 chr8 62527920 62530174 2254 181.06
C005747 SE_00029 chr8 62532243 62534092 1849 103.98
C005748 SE_00029 chr8 62540623 62542212 1589 148.65
C005749 SE_00029 chr8 62545975 62548096 2121 208.04
C005750 SE_00029 chr8 62552669 62553698 1029 99.6
C005751 SE_00029 chr8 62564291 62572796 8505 1494.82
C005752 SE_00029 chr8 62572906 62574937 2031 100.68
C005753 SE_00029 chr8 62581728 62590599 8871 1438.56
C005754 SE_00029 chr8 62591186 62629367 38181 3100
C005755 SE_00029 chr8 62629551 62637126 7575 3100