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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00030
Genomic locus: chr2:1631156-1749787
Size/Length: 118631 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_012293
Gene Symbol: PXDN
Chromosome: chr2
TSS: 1635658 (Transcription start site)
TES: 1748319 (Transcription end site)
Strand: -
Number of Exons: 23
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr2:1631156-1749787
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00030

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003056 SE_00030 chr2 1631156 1633937 2781 382.59
C003057 SE_00030 chr2 1635725 1636849 1124 110.88
C003058 SE_00030 chr2 1644960 1647796 2836 576.62
C003059 SE_00030 chr2 1648960 1652215 3255 586.1
C003060 SE_00030 chr2 1653669 1662530 8861 3100
C003061 SE_00030 chr2 1674347 1676554 2207 216.95
C003062 SE_00030 chr2 1678778 1681346 2568 241.74
C003063 SE_00030 chr2 1685054 1689218 4164 877.19
C003064 SE_00030 chr2 1689432 1695395 5963 1501.6
C003065 SE_00030 chr2 1696033 1699189 3156 525.72
C003066 SE_00030 chr2 1699509 1703625 4116 3100
C003067 SE_00030 chr2 1704292 1706855 2563 341.1
C003068 SE_00030 chr2 1710928 1714483 3555 1881.7
C003069 SE_00030 chr2 1715013 1728718 13705 3100
C003070 SE_00030 chr2 1730073 1737462 7389 3100
C003071 SE_00030 chr2 1739576 1749787 10211 3100