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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00033
Genomic locus: chr1:162581349-162728101
Size/Length: 146752 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_006182
Gene Symbol: DDR2
Chromosome: chr1
TSS: 162602227 (Transcription start site)
TES: 162750247 (Transcription end site)
Strand: +
Number of Exons: 18
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr1:162581349-162728101
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00033

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000502 SE_00033 chr1 162581349 162584410 3061 1933.61
C000503 SE_00033 chr1 162594727 162598035 3308 1480.17
C000504 SE_00033 chr1 162598470 162606968 8498 3100
C000505 SE_00033 chr1 162618242 162619451 1209 106.55
C000506 SE_00033 chr1 162624434 162625629 1195 96.05
C000507 SE_00033 chr1 162630678 162639087 8409 1275.53
C000508 SE_00033 chr1 162639581 162655949 16368 2523.47
C000509 SE_00033 chr1 162656408 162670021 13613 3100
C000510 SE_00033 chr1 162670666 162676778 6112 3010.95
C000511 SE_00033 chr1 162677239 162683583 6344 3100
C000512 SE_00033 chr1 162685697 162688591 2894 265.53
C000513 SE_00033 chr1 162693018 162696402 3384 495.33
C000514 SE_00033 chr1 162697946 162699064 1118 121.36
C000515 SE_00033 chr1 162701004 162704665 3661 1079.92
C000516 SE_00033 chr1 162704697 162706927 2230 241.6
C000517 SE_00033 chr1 162711106 162713519 2413 251.43
C000518 SE_00033 chr1 162723517 162725099 1582 189.58
C000519 SE_00033 chr1 162725567 162728101 2534 194.97