Super Enhancer Details

General details

Super-Enhancer ID:	SE_00034
Genomic locus:	chr16:20860093-20943369
Size/Length:	83276 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020424
Gene Symbol:	LYRM1
Chromosome:	chr16
TSS:	20911189 (Transcription start site)
TES:	20936331 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr16:20860093-20943369
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00034

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002455	SE_00034	chr16	20860093	20869686	9593	2920.97
C002456	SE_00034	chr16	20870242	20874920	4678	738.17
C002457	SE_00034	chr16	20876135	20886623	10488	2696.01
C002458	SE_00034	chr16	20887989	20900089	12100	1868.95
C002459	SE_00034	chr16	20900433	20902163	1730	273.9
C002460	SE_00034	chr16	20902406	20904138	1732	108.86
C002461	SE_00034	chr16	20907485	20932223	24738	3100
C002462	SE_00034	chr16	20934380	20936423	2043	199.71
C002463	SE_00034	chr16	20941008	20943369	2361	893.91