Super Enhancer Details

General details

Super-Enhancer ID:	SE_00037
Genomic locus:	chr5:131744052-131837440
Size/Length:	93388 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002198
Gene Symbol:	IRF1
Chromosome:	chr5
TSS:	131817300 (Transcription start site)
TES:	131826465 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:131744052-131837440
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00037

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004839	SE_00037	chr5	131744052	131766081	22029	3100
C004840	SE_00037	chr5	131769476	131776420	6944	3100
C004841	SE_00037	chr5	131779157	131783687	4530	3100
C004842	SE_00037	chr5	131790656	131796338	5682	3100
C004843	SE_00037	chr5	131799090	131801306	2216	500.21
C004844	SE_00037	chr5	131801669	131804171	2502	242.37
C004845	SE_00037	chr5	131804384	131806816	2432	226.54
C004846	SE_00037	chr5	131810090	131812540	2450	384.87
C004847	SE_00037	chr5	131812560	131817272	4712	300.03
C004848	SE_00037	chr5	131818712	131819766	1054	97.57
C004849	SE_00037	chr5	131820679	131837440	16761	3100