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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00038
Genomic locus: chr1:182987857-183119248
Size/Length: 131391 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_002293
Gene Symbol: LAMC1
Chromosome: chr1
TSS: 182992594 (Transcription start site)
TES: 183114727 (Transcription end site)
Strand: +
Number of Exons: 28
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr1:182987857-183119248
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00038

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000541 SE_00038 chr1 182987857 182989349 1492 180.2
C000542 SE_00038 chr1 182989993 183005830 15837 3100
C000543 SE_00038 chr1 183005832 183019514 13682 3100
C000544 SE_00038 chr1 183020023 183021548 1525 125.4
C000545 SE_00038 chr1 183025372 183035666 10294 1801.01
C000546 SE_00038 chr1 183036820 183046667 9847 1596.26
C000547 SE_00038 chr1 183047230 183052971 5741 967.91
C000548 SE_00038 chr1 183053172 183068412 15240 2135
C000549 SE_00038 chr1 183069741 183073391 3650 1040.08
C000550 SE_00038 chr1 183074042 183076676 2634 192.3
C000551 SE_00038 chr1 183076900 183079463 2563 223.28
C000552 SE_00038 chr1 183091505 183094050 2545 289.61
C000553 SE_00038 chr1 183094071 183102071 8000 1421.6
C000554 SE_00038 chr1 183102354 183113515 11161 3100
C000555 SE_00038 chr1 183116943 183119248 2305 294.5