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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00039
Genomic locus: chr2:36578955-36718688
Size/Length: 139733 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_016441
Gene Symbol: CRIM1
Chromosome: chr2
TSS: 36583369 (Transcription start site)
TES: 36778278 (Transcription end site)
Strand: +
Number of Exons: 17
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr2:36578955-36718688
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00039

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003133 SE_00039 chr2 36578955 36580908 1953 107.87
C003134 SE_00039 chr2 36581327 36592015 10688 3100
C003135 SE_00039 chr2 36592603 36602224 9621 3100
C003136 SE_00039 chr2 36602356 36605781 3425 353.05
C003137 SE_00039 chr2 36607773 36609791 2018 118.21
C003138 SE_00039 chr2 36613644 36617702 4058 467.55
C003139 SE_00039 chr2 36620555 36622214 1659 137.5
C003140 SE_00039 chr2 36622254 36627612 5358 455.07
C003141 SE_00039 chr2 36628424 36630490 2066 122.77
C003142 SE_00039 chr2 36630751 36644963 14212 2225.34
C003143 SE_00039 chr2 36655628 36656985 1357 156.5
C003144 SE_00039 chr2 36657185 36662851 5666 2723.04
C003145 SE_00039 chr2 36665439 36667487 2048 158.52
C003146 SE_00039 chr2 36667624 36670406 2782 474.78
C003147 SE_00039 chr2 36672342 36675517 3175 270.14
C003148 SE_00039 chr2 36675799 36686026 10227 3100
C003149 SE_00039 chr2 36686242 36692228 5986 975.37
C003150 SE_00039 chr2 36695625 36697737 2112 384.64
C003151 SE_00039 chr2 36699573 36701813 2240 173.61
C003152 SE_00039 chr2 36704044 36706850 2806 443.71
C003153 SE_00039 chr2 36709241 36710951 1710 113.52
C003154 SE_00039 chr2 36711418 36718688 7270 2616.56