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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00041
Genomic locus: chr12:45582850-45752605
Size/Length: 169755 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001142678
Gene Symbol: ANO6
Chromosome: chr12
TSS: 45609769 (Transcription start site)
TES: 45826134 (Transcription end site)
Strand: +
Number of Exons: 21
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr12:45582850-45752605
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00041

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001612 SE_00041 chr12 45582850 45583720 870 131.53
C001613 SE_00041 chr12 45584188 45586737 2549 224.16
C001614 SE_00041 chr12 45593284 45595688 2404 341.41
C001615 SE_00041 chr12 45595920 45600480 4560 3100
C001616 SE_00041 chr12 45601761 45604379 2618 334.11
C001617 SE_00041 chr12 45607730 45615658 7928 3100
C001618 SE_00041 chr12 45616003 45618385 2382 262.91
C001619 SE_00041 chr12 45624160 45630461 6301 3100
C001620 SE_00041 chr12 45637261 45640521 3260 1531.99
C001621 SE_00041 chr12 45650587 45656090 5503 1123.94
C001622 SE_00041 chr12 45657180 45658778 1598 187.07
C001623 SE_00041 chr12 45661132 45664574 3442 1269.24
C001624 SE_00041 chr12 45664772 45671037 6265 1705.14
C001625 SE_00041 chr12 45671803 45674723 2920 432.43
C001626 SE_00041 chr12 45677093 45679309 2216 290.36
C001627 SE_00041 chr12 45683006 45685234 2228 317.67
C001628 SE_00041 chr12 45685572 45688562 2990 790.22
C001629 SE_00041 chr12 45689968 45694314 4346 1461.38
C001630 SE_00041 chr12 45696512 45699847 3335 208.78
C001631 SE_00041 chr12 45699946 45707003 7057 1298.86
C001632 SE_00041 chr12 45716503 45719889 3386 212.11
C001633 SE_00041 chr12 45721963 45725662 3699 874.69
C001634 SE_00041 chr12 45731807 45733261 1454 93.49
C001635 SE_00041 chr12 45736263 45738249 1986 138.26
C001636 SE_00041 chr12 45741915 45743296 1381 117.14
C001637 SE_00041 chr12 45743549 45745941 2392 187.86
C001638 SE_00041 chr12 45749408 45752605 3197 878.22