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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00042
Genomic locus: chr2:165547251-165708317
Size/Length: 161066 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_014900
Gene Symbol: COBLL1
Chromosome: chr2
TSS: 165536694 (Transcription start site)
TES: 165697928 (Transcription end site)
Strand: -
Number of Exons: 13
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr2:165547251-165708317
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00042

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003478 SE_00042 chr2 165547251 165550916 3665 482.69
C003479 SE_00042 chr2 165552040 165553275 1235 93.61
C003480 SE_00042 chr2 165556618 165558459 1841 138.01
C003481 SE_00042 chr2 165559095 165562185 3090 571.49
C003482 SE_00042 chr2 165569137 165580348 11211 876.47
C003483 SE_00042 chr2 165585810 165588146 2336 98.11
C003484 SE_00042 chr2 165590561 165591922 1361 112.58
C003485 SE_00042 chr2 165593417 165598275 4858 850.95
C003486 SE_00042 chr2 165603563 165608050 4487 302.92
C003487 SE_00042 chr2 165611803 165614337 2534 325.31
C003488 SE_00042 chr2 165614353 165617796 3443 430.49
C003489 SE_00042 chr2 165617824 165619432 1608 145.31
C003490 SE_00042 chr2 165621269 165624207 2938 269.56
C003491 SE_00042 chr2 165626148 165628561 2413 211.98
C003492 SE_00042 chr2 165633339 165644212 10873 3100
C003493 SE_00042 chr2 165647754 165653053 5299 1525.38
C003494 SE_00042 chr2 165653147 165657124 3977 1096.52
C003495 SE_00042 chr2 165657635 165661913 4278 1523.61
C003496 SE_00042 chr2 165664344 165670613 6269 1650.26
C003497 SE_00042 chr2 165670671 165674260 3589 541.31
C003498 SE_00042 chr2 165677516 165680623 3107 338.9
C003499 SE_00042 chr2 165680652 165683929 3277 199.73
C003500 SE_00042 chr2 165685204 165687811 2607 287.1
C003501 SE_00042 chr2 165687909 165689606 1697 433.89
C003502 SE_00042 chr2 165689629 165701294 11665 3100
C003503 SE_00042 chr2 165703783 165708317 4534 1093.28