Super Enhancer Details

General details

Super-Enhancer ID:	SE_00043
Genomic locus:	chr6:111857372-111951393
Size/Length:	94021 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001164282
Gene Symbol:	TRAF3IP2
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:111857372-111951393
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00043

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005181	SE_00043	chr6	111857372	111859794	2422	606.67
C005182	SE_00043	chr6	111862274	111864505	2231	136.64
C005183	SE_00043	chr6	111872754	111874669	1915	204.3
C005184	SE_00043	chr6	111875380	111877085	1705	201.92
C005185	SE_00043	chr6	111879391	111882242	2851	1889.82
C005186	SE_00043	chr6	111884420	111892129	7709	951.78
C005187	SE_00043	chr6	111893194	111899269	6075	3100
C005188	SE_00043	chr6	111900385	111904332	3947	1140.78
C005189	SE_00043	chr6	111905012	111917090	12078	3100
C005190	SE_00043	chr6	111917838	111928604	10766	3100
C005191	SE_00043	chr6	111935501	111937626	2125	228.13
C005192	SE_00043	chr6	111939457	111940999	1542	175.53
C005193	SE_00043	chr6	111946233	111951393	5160	2158.13