Super Enhancer Details

General details

Super-Enhancer ID:	SE_00044
Genomic locus:	chr4:87919434-88044361
Size/Length:	124927 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005935
Gene Symbol:	AFF1
Chromosome:	chr4
TSS:	87856153 (Transcription start site)
TES:	88062206 (Transcription end site)
Strand:	+
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr4:87919434-88044361
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00044

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004499	SE_00044	chr4	87919434	87922274	2840	467.05
C004500	SE_00044	chr4	87925917	87937753	11836	3100
C004501	SE_00044	chr4	87938963	87941197	2234	321.15
C004502	SE_00044	chr4	87944212	87947209	2997	365.64
C004503	SE_00044	chr4	87949652	87970431	20779	3072.82
C004504	SE_00044	chr4	87974201	87982793	8592	3100
C004505	SE_00044	chr4	87993762	87996201	2439	489.94
C004506	SE_00044	chr4	87997801	88004944	7143	2300.45
C004507	SE_00044	chr4	88009949	88011296	1347	131.6
C004508	SE_00044	chr4	88012926	88016028	3102	647.05
C004509	SE_00044	chr4	88020931	88027497	6566	1905.19
C004510	SE_00044	chr4	88028019	88031425	3406	1860.52
C004511	SE_00044	chr4	88036515	88040175	3660	974.13
C004512	SE_00044	chr4	88040796	88044361	3565	1586.57