Super Enhancer Details

General details

Super-Enhancer ID:	SE_00045
Genomic locus:	chr1:8402564-8538135
Size/Length:	135571 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001042682
Gene Symbol:	RERE
Chromosome:	chr1
TSS:	8412463 (Transcription start site)
TES:	8483747 (Transcription end site)
Strand:	-
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:8402564-8538135
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00045

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000001	SE_00045	chr1	8402564	8404752	2188	356.64
C000002	SE_00045	chr1	8411078	8414300	3222	1046
C000003	SE_00045	chr1	8422662	8424973	2311	237.48
C000004	SE_00045	chr1	8428649	8443854	15205	3100
C000005	SE_00045	chr1	8443929	8445586	1657	141.69
C000006	SE_00045	chr1	8446246	8448583	2337	928.76
C000007	SE_00045	chr1	8452127	8460150	8023	3100
C000008	SE_00045	chr1	8464230	8465561	1331	601.13
C000009	SE_00045	chr1	8465614	8485937	20323	3100
C000010	SE_00045	chr1	8487267	8488901	1634	171.09
C000011	SE_00045	chr1	8497982	8499894	1912	293.58
C000012	SE_00045	chr1	8508476	8509938	1462	248.15
C000013	SE_00045	chr1	8515362	8517095	1733	114.76
C000014	SE_00045	chr1	8520929	8525113	4184	642.86
C000015	SE_00045	chr1	8536898	8538135	1237	119.5