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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00047
Genomic locus: chr5:142656014-142786266
Size/Length: 130252 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001020825
Gene Symbol: NR3C1
Chromosome: chr5
TSS: 142657495 (Transcription start site)
TES: 142783254 (Transcription end site)
Strand: -
Number of Exons: 9
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr5:142656014-142786266
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00047

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004855 SE_00047 chr5 142656014 142659914 3900 699.44
C004856 SE_00047 chr5 142660939 142662342 1403 128.52
C004857 SE_00047 chr5 142663862 142666731 2869 191.63
C004858 SE_00047 chr5 142676254 142678576 2322 148.41
C004859 SE_00047 chr5 142681037 142682855 1818 133.15
C004860 SE_00047 chr5 142684833 142703056 18223 921.91
C004861 SE_00047 chr5 142708256 142710675 2419 310.82
C004862 SE_00047 chr5 142710711 142712026 1315 122.39
C004863 SE_00047 chr5 142714026 142716432 2406 442.32
C004864 SE_00047 chr5 142718278 142723685 5407 1531.16
C004865 SE_00047 chr5 142725291 142738142 12851 1157.84
C004866 SE_00047 chr5 142739431 142742135 2704 266.17
C004867 SE_00047 chr5 142749929 142753023 3094 329.89
C004868 SE_00047 chr5 142753283 142757707 4424 669.8
C004869 SE_00047 chr5 142758866 142760504 1638 96.61
C004870 SE_00047 chr5 142766416 142786266 19850 3100