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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00048
Genomic locus: chr6:53100514-53226188
Size/Length: 125674 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_021814
Gene Symbol: ELOVL5
Chromosome: chr6
TSS: 53132195 (Transcription start site)
TES: 53213977 (Transcription end site)
Strand: -
Number of Exons: 7
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr6:53100514-53226188
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00048

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005128 SE_00048 chr6 53100514 53101884 1370 228.98
C005129 SE_00048 chr6 53113818 53117931 4113 2823.46
C005130 SE_00048 chr6 53118799 53120312 1513 148.58
C005131 SE_00048 chr6 53122027 53124816 2789 117.58
C005132 SE_00048 chr6 53125422 53135907 10485 2374.31
C005133 SE_00048 chr6 53136255 53138635 2380 319.69
C005134 SE_00048 chr6 53139067 53150501 11434 693.65
C005135 SE_00048 chr6 53151822 53169259 17437 3100
C005136 SE_00048 chr6 53171035 53181937 10902 938.79
C005137 SE_00048 chr6 53184785 53194374 9589 3100
C005138 SE_00048 chr6 53196979 53203319 6340 1026.9
C005139 SE_00048 chr6 53205214 53215934 10720 3100
C005140 SE_00048 chr6 53217098 53219205 2107 296.23
C005141 SE_00048 chr6 53219547 53221131 1584 108.42
C005142 SE_00048 chr6 53221880 53226188 4308 3100