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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00049
Genomic locus: chr3:171756467-171898840
Size/Length: 142373 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001135095
Gene Symbol: FNDC3B
Chromosome: chr3
TSS: 171758343 (Transcription start site)
TES: 172118492 (Transcription end site)
Strand: +
Number of Exons: 26
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr3:171756467-171898840
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00049

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004408 SE_00049 chr3 171756467 171765953 9486 3100
C004409 SE_00049 chr3 171769883 171777204 7321 848.3
C004410 SE_00049 chr3 171778778 171780468 1690 223.6
C004411 SE_00049 chr3 171782977 171785105 2128 235.67
C004412 SE_00049 chr3 171786893 171790412 3519 386.72
C004413 SE_00049 chr3 171790443 171794704 4261 1124.99
C004414 SE_00049 chr3 171798087 171803436 5349 728.18
C004415 SE_00049 chr3 171804631 171806166 1535 95.65
C004416 SE_00049 chr3 171806964 171808610 1646 176.4
C004417 SE_00049 chr3 171810949 171817632 6683 955.3
C004418 SE_00049 chr3 171823523 171827272 3749 203.45
C004419 SE_00049 chr3 171835274 171836419 1145 96.81
C004420 SE_00049 chr3 171841997 171861661 19664 3100
C004421 SE_00049 chr3 171861823 171864865 3042 370.28
C004422 SE_00049 chr3 171866051 171867736 1685 199.24
C004423 SE_00049 chr3 171868997 171875912 6915 3100
C004424 SE_00049 chr3 171876791 171878609 1818 278.78
C004425 SE_00049 chr3 171881141 171882344 1203 109.6
C004426 SE_00049 chr3 171885414 171890744 5330 1157.96
C004427 SE_00049 chr3 171893219 171894995 1776 171.6
C004428 SE_00049 chr3 171897626 171898840 1214 104.07