Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00051
Genomic locus: chr11:101979534-102114317
Size/Length: 134783 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001195045
Gene Symbol: YAP1
Chromosome: chr11
TSS: 101983170 (Transcription start site)
TES: 102104154 (Transcription end site)
Strand: +
Number of Exons: 9
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr11:101979534-102114317
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00051

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001412 SE_00051 chr11 101979534 101992005 12471 3100
C001413 SE_00051 chr11 102000928 102003858 2930 239.14
C001414 SE_00051 chr11 102007338 102013642 6304 1556.19
C001415 SE_00051 chr11 102013704 102029645 15941 406.32
C001416 SE_00051 chr11 102038818 102044996 6178 3100
C001417 SE_00051 chr11 102047309 102050937 3628 1242.99
C001418 SE_00051 chr11 102054473 102060772 6299 2466.26
C001419 SE_00051 chr11 102061889 102064120 2231 344.48
C001420 SE_00051 chr11 102066146 102072222 6076 1698.6
C001421 SE_00051 chr11 102074600 102076276 1676 241.81
C001422 SE_00051 chr11 102078981 102081709 2728 361.04
C001423 SE_00051 chr11 102083915 102090278 6363 3100
C001424 SE_00051 chr11 102090679 102097777 7098 1443.58
C001425 SE_00051 chr11 102099149 102101472 2323 390.04
C001426 SE_00051 chr11 102104808 102114317 9509 1045.39