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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00052
Genomic locus: chr14:53310705-53428441
Size/Length: 117736 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_006832
Gene Symbol: FERMT2
Chromosome: chr14
TSS: 53323988 (Transcription start site)
TES: 53417815 (Transcription end site)
Strand: -
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr14:53310705-53428441
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00052

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001971 SE_00052 chr14 53310705 53312444 1739 319.31
C001972 SE_00052 chr14 53313262 53314502 1240 123.87
C001973 SE_00052 chr14 53319227 53320263 1036 100.7
C001974 SE_00052 chr14 53326741 53335026 8285 1670.98
C001975 SE_00052 chr14 53335053 53336665 1612 142.12
C001976 SE_00052 chr14 53336821 53356962 20141 2495.59
C001977 SE_00052 chr14 53357527 53358656 1129 94.22
C001978 SE_00052 chr14 53359278 53363808 4530 372.57
C001979 SE_00052 chr14 53364336 53367464 3128 507.57
C001980 SE_00052 chr14 53367474 53371074 3600 497.56
C001981 SE_00052 chr14 53371221 53381176 9955 3100
C001982 SE_00052 chr14 53381227 53396570 15343 3100
C001983 SE_00052 chr14 53396911 53408744 11833 1344.01
C001984 SE_00052 chr14 53409075 53420304 11229 3100
C001985 SE_00052 chr14 53426029 53428441 2412 427.03