Super Enhancer Details

General details

Super-Enhancer ID:	SE_00053
Genomic locus:	chr10:4981129-5069064
Size/Length:	87935 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001353
Gene Symbol:	AKR1C1
Chromosome:	chr10
TSS:	5005453 (Transcription start site)
TES:	5020158 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:4981129-5069064
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00053

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000706	SE_00053	chr10	4981129	4992528	11399	3100
C000707	SE_00053	chr10	5004387	5019568	15181	1386.7
C000708	SE_00053	chr10	5019606	5025660	6054	700.11
C000709	SE_00053	chr10	5026216	5028544	2328	225.71
C000710	SE_00053	chr10	5028553	5047274	18721	993.68
C000711	SE_00053	chr10	5055907	5064330	8423	3100
C000712	SE_00053	chr10	5066976	5069064	2088	152.6