Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00054
Genomic locus: chr13:41119761-41243259
Size/Length: 123498 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_002015
Gene Symbol: FOXO1
Chromosome: chr13
TSS: 41129800 (Transcription start site)
TES: 41240734 (Transcription end site)
Strand: -
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr13:41119761-41243259
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00054

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001829 SE_00054 chr13 41119761 41124021 4260 694.66
C001830 SE_00054 chr13 41130416 41134150 3734 673.15
C001831 SE_00054 chr13 41135551 41140621 5070 2411.15
C001832 SE_00054 chr13 41141865 41144217 2352 632.57
C001833 SE_00054 chr13 41144510 41150703 6193 619.56
C001834 SE_00054 chr13 41154644 41156626 1982 149.88
C001835 SE_00054 chr13 41158399 41175163 16764 2643.86
C001836 SE_00054 chr13 41179258 41180501 1243 172
C001837 SE_00054 chr13 41182905 41189421 6516 1660.52
C001838 SE_00054 chr13 41189601 41195825 6224 3155.77
C001839 SE_00054 chr13 41195942 41202134 6192 1844.02
C001840 SE_00054 chr13 41203606 41205935 2329 114.14
C001841 SE_00054 chr13 41207351 41208976 1625 179.52
C001842 SE_00054 chr13 41210991 41215550 4559 3056.13
C001843 SE_00054 chr13 41217032 41228847 11815 3100
C001844 SE_00054 chr13 41229562 41243259 13697 2696.21