Super Enhancer Details

General details

Super-Enhancer ID:	SE_00055
Genomic locus:	chr7:75920207-75994738
Size/Length:	74531 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001540
Gene Symbol:	HSPB1
Chromosome:	chr7
TSS:	75931874 (Transcription start site)
TES:	75933614 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr7:75920207-75994738
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00055

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005392	SE_00055	chr7	75920207	75925655	5448	3100
C005393	SE_00055	chr7	75925785	75927338	1553	206.78
C005394	SE_00055	chr7	75930262	75935054	4792	3100
C005395	SE_00055	chr7	75935280	75937316	2036	191.07
C005396	SE_00055	chr7	75946036	75989884	43848	3100
C005397	SE_00055	chr7	75992931	75994738	1807	826.45