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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00056
Genomic locus: chr2:47166289-47314830
Size/Length: 148541 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001171508
Gene Symbol: MCFD2
Chromosome: chr2
TSS: 47129008 (Transcription start site)
TES: 47168994 (Transcription end site)
Strand: -
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr2:47166289-47314830
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00056

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003215 SE_00056 chr2 47166289 47172649 6360 3100
C003216 SE_00056 chr2 47176819 47178665 1846 349.22
C003217 SE_00056 chr2 47180725 47184883 4158 1607.29
C003218 SE_00056 chr2 47188829 47192947 4118 783.04
C003219 SE_00056 chr2 47193106 47196568 3462 1627.43
C003220 SE_00056 chr2 47196894 47199440 2546 328.02
C003221 SE_00056 chr2 47210105 47218187 8082 3100
C003222 SE_00056 chr2 47228729 47233257 4528 818.29
C003223 SE_00056 chr2 47234471 47237171 2700 344.41
C003224 SE_00056 chr2 47247573 47249982 2409 393.83
C003225 SE_00056 chr2 47259097 47264869 5772 3100
C003226 SE_00056 chr2 47265751 47272077 6326 1353.68
C003227 SE_00056 chr2 47282414 47286739 4325 3100
C003228 SE_00056 chr2 47294181 47301386 7205 3100
C003229 SE_00056 chr2 47302514 47305420 2906 384.91
C003230 SE_00056 chr2 47310151 47314830 4679 677.09