Super Enhancer Details

General details

Super-Enhancer ID:	SE_00057
Genomic locus:	chr9:676861-753783
Size/Length:	76922 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_153186
Gene Symbol:	KANK1
Chromosome:	chr9
TSS:	706805 (Transcription start site)
TES:	746106 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:676861-753783
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00057

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005843	SE_00057	chr9	676861	678695	1834	314.07
C005844	SE_00057	chr9	682186	707716	25530	3100
C005845	SE_00057	chr9	708004	710295	2291	1119.57
C005846	SE_00057	chr9	710787	719207	8420	1273.77
C005847	SE_00057	chr9	719251	723285	4034	483.83
C005848	SE_00057	chr9	724054	725596	1542	208.18
C005849	SE_00057	chr9	728328	730401	2073	314.53
C005850	SE_00057	chr9	731625	740185	8560	2409.41
C005851	SE_00057	chr9	741771	746700	4929	1462.07
C005852	SE_00057	chr9	746853	749128	2275	181.26
C005853	SE_00057	chr9	749786	753783	3997	1196.26