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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00059
Genomic locus: chr3:66414139-66556837
Size/Length: 142698 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_015541
Gene Symbol: LRIG1
Chromosome: chr3
TSS: 66429220 (Transcription start site)
TES: 66550845 (Transcription end site)
Strand: -
Number of Exons: 19
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr3:66414139-66556837
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00059

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004164 SE_00059 chr3 66414139 66417082 2943 271.16
C004165 SE_00059 chr3 66425849 66429404 3555 393.58
C004166 SE_00059 chr3 66435086 66440662 5576 955.53
C004167 SE_00059 chr3 66442217 66460424 18207 1416.94
C004168 SE_00059 chr3 66461003 66462747 1744 310.89
C004169 SE_00059 chr3 66463609 66466098 2489 256.41
C004170 SE_00059 chr3 66466422 66468321 1899 188.22
C004171 SE_00059 chr3 66468437 66470218 1781 335.73
C004172 SE_00059 chr3 66473641 66484587 10946 898.83
C004173 SE_00059 chr3 66491301 66495132 3831 1063.15
C004174 SE_00059 chr3 66498348 66505709 7361 2266.37
C004175 SE_00059 chr3 66511806 66516280 4474 1950.65
C004176 SE_00059 chr3 66517650 66522203 4553 1197.94
C004177 SE_00059 chr3 66522320 66525984 3664 988.45
C004178 SE_00059 chr3 66530196 66552544 22348 1482.08
C004179 SE_00059 chr3 66553947 66556837 2890 544.18