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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00062
Genomic locus: chr5:42421467-42633445
Size/Length: 211978 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_000163
Gene Symbol: GHR
Chromosome: chr5
TSS: 42549657 (Transcription start site)
TES: 42721980 (Transcription end site)
Strand: +
Number of Exons: 10
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr5:42421467-42633445
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00062

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004691 SE_00062 chr5 42421467 42427584 6117 1882.32
C004692 SE_00062 chr5 42429120 42431164 2044 327.28
C004693 SE_00062 chr5 42432423 42437636 5213 828.17
C004694 SE_00062 chr5 42439150 42440388 1238 98.13
C004695 SE_00062 chr5 42442472 42444062 1590 100.44
C004696 SE_00062 chr5 42444150 42447532 3382 193.42
C004697 SE_00062 chr5 42452026 42454376 2350 227
C004698 SE_00062 chr5 42456455 42457727 1272 146.12
C004699 SE_00062 chr5 42460858 42462057 1199 148.04
C004700 SE_00062 chr5 42468981 42470339 1358 102.63
C004701 SE_00062 chr5 42470547 42473472 2925 242.68
C004702 SE_00062 chr5 42483248 42486735 3487 167.16
C004703 SE_00062 chr5 42489765 42508698 18933 851.25
C004704 SE_00062 chr5 42508870 42511402 2532 201.45
C004705 SE_00062 chr5 42516108 42524170 8062 2539.35
C004706 SE_00062 chr5 42530120 42533011 2891 378.35
C004707 SE_00062 chr5 42543502 42545714 2212 279.62
C004708 SE_00062 chr5 42546150 42558729 12579 873.01
C004709 SE_00062 chr5 42560236 42563325 3089 871.52
C004710 SE_00062 chr5 42564511 42573776 9265 2600.27
C004711 SE_00062 chr5 42576599 42581625 5026 385.96
C004712 SE_00062 chr5 42583117 42585530 2413 165.44
C004713 SE_00062 chr5 42585583 42589476 3893 872.87
C004714 SE_00062 chr5 42590344 42592195 1851 190.63
C004715 SE_00062 chr5 42596558 42601861 5303 436.41
C004716 SE_00062 chr5 42602305 42605049 2744 265.81
C004717 SE_00062 chr5 42611054 42616310 5256 1130.43
C004718 SE_00062 chr5 42616473 42618202 1729 96.66
C004719 SE_00062 chr5 42620506 42623109 2603 96.08
C004720 SE_00062 chr5 42631806 42633445 1639 118.07