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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00064
Genomic locus: chr1:204374155-204477633
Size/Length: 103478 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_032833
Gene Symbol: PPP1R15B
Chromosome: chr1
TSS: 204372491 (Transcription start site)
TES: 204380945 (Transcription end site)
Strand: -
Number of Exons: 2
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr1:204374155-204477633
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00064

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000606 SE_00064 chr1 204374155 204384372 10217 3100
C000607 SE_00064 chr1 204384866 204397800 12934 2790.42
C000608 SE_00064 chr1 204399894 204414466 14572 2917.46
C000609 SE_00064 chr1 204415801 204417319 1518 183.81
C000610 SE_00064 chr1 204417530 204422553 5023 1158.96
C000611 SE_00064 chr1 204423204 204424583 1379 187.36
C000612 SE_00064 chr1 204424734 204425673 939 92.49
C000613 SE_00064 chr1 204429083 204439520 10437 3100
C000614 SE_00064 chr1 204441669 204443087 1418 133.45
C000615 SE_00064 chr1 204443336 204445611 2275 386.74
C000616 SE_00064 chr1 204447165 204449222 2057 246.82
C000617 SE_00064 chr1 204449299 204454445 5146 733.57
C000618 SE_00064 chr1 204460240 204464940 4700 3072.39
C000619 SE_00064 chr1 204474362 204477633 3271 1175.5